Abstract Stem Cells in the Genomic Era

As. Pac. J. Mol. Biol. & Biotech., June 2005 Vol. 13, 1-13

REVIEW

Stem Cells in the Genomic Era


Shahrul Hisham Zainal Ariffin1*, Rohaya Megat Abdul Wahab2, Ismanizan Ismail4, Nor Muhammad Mahadi1 and Zaidah Zainal Ariffin3

1Center for Gene Analysis and Technology, School of Biosciences and Biotechnology, Faculty of Science and Technology, UKM, 43600 Bangi, Selangor
2Department of Orthodontic, Faculty of Dentistry, UKM, Jalan Raja Muda Abdul Aziz, 50300 Kuala Lumpur.
3Department of Microbiology, Faculty of Applied Sciences, UiTM, 40450 Shah Alam, Selangor.
4Plant Biotechnology Laboratory, School of Biosciences and Biotechnology, Faculty of Science and Technology, UKM, 43600 Bangi, Selangor.

*Author for Correspondence.
Center for Gene Analysis and Technology,
School of Biosciences and Biotechnology,
Faculty of Science and Technology 43600
Universiti Kebangsaan Malaysia, Selangor.
Tel: 603-89213245
Email: This email address is being protected from spambots. You need JavaScript enabled to view it.

Key words: stem cells, βc subunit, α subunit, cytoplasmic domain, cellular signals

Abstract.
Stem cells that have totipotent, pluripotent and multipotent abilities can be divided into two main categories: embryonic stem cells and adult stem cells. Embryonic stem cells originate from the inner cell mass of the blastocyst stage during embryonic development whereas adult stem cells are derived from bone marrow. Stem cells have the ability to differentiate into mature cells or transdifferentiate into other tissues partly due to cellular signals triggered by the growth factors such as cytokines. Cytokines produce cellular signals through the cytoplasmic domain of their cognate receptor. Cytokine receptors have been categorised into several superfamilies followed by subfamilies partly due to structural similarities (extracellular and cytoplasmic domains) and combination of subunits. The ability of IL-3 to trigger differentiation not only to haemopoietic stem cells but also to liver stem cells might be a potential factor for transdifferentiation. IL-3, GM-CSF and IL-5 receptors are members of a common β subfamily because they share the same β subunit known as β common (βc). This review focuses on the b subfamily and in particular on their potential signalling pathways, i.e. proliferation, differentiation and survival that triggers at the cytoplasmic domain of both subunits (α subunits and βc) on the stem cells

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Abstract Comparison of β-glucuronidase expression and anatomical localization in bombarded immature embryos of banana cultivar Mas via biolistic transformation

As. Pac. J. Mol. Biol. & Biotech., June 2005 Vol. 13, 15-22

Comparison of β-glucuronidase expression and anatomical localization in bombarded immature embryos of banana cultivar Mas via biolistic transformation

Wong Wei Chee1, Mahanom Jalil1, Meilina Ong Abdullah2, Rofina Yasmin Othman1, Norzulaani Khalid1*

1Institute of Biological Sciences, Faculty of Science, University of Malaya, 50603 Lembah Pantai, Kuala Lumpur, Malaysia
2Advanced Biotechnology & Breeding Centre, Malaysian Palm Oil Board, 6, Persiaran Institusi, Bandar Baru Bangi, 43000 Kajang, Selangor, Malaysia.

*Author for Correspondence.
Institute of Biological Sciences,
Faculty of Science, University of Malaya,
50603 Kuala Lumpur, Malaysia.
Tel: 603-7967 4380.
Email: This email address is being protected from spambots. You need JavaScript enabled to view it.

Key words: Somatic embryogenesis, Plant transformation, Biolistic bombardment, GUS localization, transgenic banana
Abbreviations: 6-BA: 6-Benzyladenine, 2,4-D: 2,4-Dichlorophenoxyacetic Acid, NAA: 1-Naphthaleneacetic acid, 2ip: N6-(2isopentenyl)adenine, SCV: settled cell volume, GUS: β-glucuronidase

Abstract.
To obtain stable expression of a foreign gene, it is important to have optimized conditions for plant genetic transformation. Here, a GUS intron-containing gene driven by CaMV 35S promoter was used to optimize the conditions of biolistic transformation of banana immature embryos and also for the study of GUS localization in the transformed cells. The GUS activity detected histochemically and fluorometrically were further analysed by microscopy. This histological study confirmed the results in the histochemical and fluorometric assay, where highest expression of GUS was achieved when the immature embryos bombarded with the helium pressure of 1350 psi and placed at the target distance of 6 cm. The observation of strong GUS staining in the deep layers of the cell structure were produced by higher acceleration pressure and shorter target distance, whereas weak GUS staining in the plant epidermis layer were observed in most lower acceleration pressure and higher target distance. The study of GUS localization on biolistic transformation provided more reliable parameters for transformation. It may also indicate the locality of the foreign gene expression area in the transgenic plant that can provide more understanding of the nature of transgene and its integration.

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Abstract Random Amplified Polymorphic DNA (RAPD) and Random Amplified Microsatellite (RAMS) of Ganoderma from Infected Oil Palm and Coconut Stumps in Malaysia

As. Pac. J. Mol. Biol. & Biotech., June 2005 Vol. 13, 23-34

Random Amplified Polymorphic DNA (RAPD) and Random Amplified Microsatellite (RAMS) of Ganoderma from Infected Oil Palm and Coconut Stumps in Malaysia

Latiffah Zakaria1*, Harikrishna Kulaveraasingham2, Tan Soon Guan3, Faridah Abdullah3 and Ho Yin Wan2

1School of Biological Sciences, Universiti Sains Malaysia, 11800 Minden, Penang
2 Institute of Bioscience, 3Department of Biology, Universiti Putra Malaysia, Serdang, Selangor, Malaysia

*Author for Correspondence.
School of Biological Sciences
Universiti Sains Malaysia
11800 Minden, Penang Malaysia
Tel: 604–6533506; Fax : 604-6565125
Email : This email address is being protected from spambots. You need JavaScript enabled to view it.

Key words: Ganoderma, oil palm, coconut, RAPD, RAMS

Abstract.
Random amplified polymorphic DNA (RAPD) and random amplified microsatellite (RAMS) analyses were used to determine the genetic relatedness within and between Ganoderma boninense isolates from infected oil palm and Ganoderma sp. from coconut stumps from different locations in Malaysia. RAPD analysis using four random primers (5'ACCTGGACAC3', 5'CAGCGACAAG3', 5'AGAGGGCACA3' and 5'TGACGGCGGT3') showed variations of banding patterns within and between the isolates from oil palm and coconut stumps, indicating that they were genetically heterogeneous. There was no specific banding pattern that could differentiate between G. boninense isolates from infected oil palm and Ganoderma sp. from coconut stumps. RAMS analysis using four microsatellite primers, 5'BDB(ACA)5, 5'DD(CCA)5, 5'DHB(CGA)5 and 5'YHY(GT)5G, also showed variable banding patterns among the isolates from infected oil palm and coconut stumps. However, five common bands i.e. two bands (900 bp and 1200 bp) produced by primer (CGA)5, one band (1400 bp) by primer (ACA)5 and two bands (350 bp and 380 bp) by primer (CCA)5 were shown by all the G. boninense isolates from infected oil palm and Ganoderma sp. from coconut stumps. Dendrograms from cluster analysis based on UPGMA of RAPD and RAMS data showed that G. boninense isolates from infected oil palm and Ganoderma sp. from coconut stumps did not cluster separately into two distinct clusters, but were clustered together, which indicated that both groups of Ganoderma are closely related. The finding that the Ganoderma isolates from coconut stumps are closely related to G. boninense isolates from infected oil palm would have an important bearing in the formulation of disease control measures and replanting procedures, especially in areas where the previous crop was coconut.

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Abstract Physical And Biological Parameters Affecting Transient GUS And GFP Expression In Banana Via Particle Bombardment

As. Pac. J. Mol. Biol. & Biotech., June 2005 Vol. 13, 35-57

Physical And Biological Parameters Affecting Transient GUS And GFP Expression In Banana Via Particle Bombardment

Sreeramanan. S. 1,2, Maziah. M.1, Abdullah M.P.1, Sariah .M.3, Xavier, R.4 and Nor’Aini M.F4

1Department of Biochemistry, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, 43400, Serdang , Selangor DarulEhsan , Malaysia
2Department of Biotechnology, Asian Institute of Medicine, Science and Technology (AIMST), Amanjaya, 08000, Sungai Petani, Kedah
3Department of Plant Protection , Faculty of Agriculture, Universiti Putra Malaysia
4Department of Biology, Faculty of Science and Environmental Studies, Universiti Putra Malaysia.

*Author for Correspondence.
Department of Biotechnology
Asian Institute of Medicine
Science and Technology (AIMST)
Amanjaya, 08000, Sungai Petani, Kedah
Tel: 604-4422884; Fax: 604-4422887
Email : This email address is being protected from spambots. You need JavaScript enabled to view it.

Key words: Particle bombardment, Banana, Transient gene expression
Abbreviations: GUS: β–glucuronidase; GFP: Green fluorescent protein, MS: Murashige and Skoog

Abstract.
Physical and biological parameters for DNA delivery into banana cultivar, Rastali (AAB) explants were optimised by monitoring transient gusA and gfp gene expression. Optimisation of the physical factors was carried out under the following conditions; helium pressure (450, 900, 1100, 1350 and 1550psi); distance from stopping plate to target tissue (3, 6, 9 and 12 cm); vacuum pressure (26, 27, 28 and 29 mmHg), number of bombardments (1, 2 and 3 times) per Petri dish and gold microcarrier size (0.6 and 1.0 µm). Distance from rupture disk to macrocarrier and macrocarrier to stopping screen was fixed at 4mm and 11mm, respectively. Two controls were also incorporated i.e. tissues without bombardment and bombardment of microcarrier without DNA. The biological parameters included the explant type (single bud and corm slice), influence of explant sizes (3, 5 and 10 mm), preculture treatment prior bombardment (0, 1, 2, 3 and 4 days), DNA concentrations (0.5, 1.0, 1.5, 2.0 and 2.5 µg) and effect of post-bombardment incubation time (3, 6, 9, 12, 15 and 18 days). Optimised bombardment conditions for single bud was bombarding twice at 1100 psi, 9cm target distance, 28 mmHg, 1 µM gold particle size, 3mm in size range, 1.5 µg DNA per bombardment, three days preculture prior to bombardment and six days post bombardment. For corm slice, the optimised bombardment conditions was bombarding once at a helium pressure of 1100 psi helium pressure, 9cm (gusA gene) or 6cm (gfp gene) target distance, 28 mmHg vacuum pressure and 1 mM gold particle size, 5mm in size range, 1.5 mg DNA per bombardment, one day preculture prior to bombardment and nine days post bombardment. Combinations of optimised physical and biological parameters and an effective selection system were developed which allowed high-efficiency of DNA delivery combined with minimum damage to target banana tissues.

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Abstract The comparative recovery performance of anion exchange and dye-ligand fluidised bed adsorption of G3PDH from unclarified yeast extract

As. Pac. J. Mol. Biol. & Biotech., June 2005 Vol. 13, 59-62

The comparative recovery performance of anion exchange and dye-ligand fluidised bed adsorption of G3PDH from unclarified yeast extract

Tau Chuan Ling1,2* and Andrew Lyddiatt1,3

1Biochemical Recovery Group, Department of Chemical Engineering, School of Engineering , University of Birmingham, Edgbaston, Birmingham , B15 2TT, UK
2 Current address: Department of Process and Food Engineering, Faculty of Engineering, Universiti Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia
3Current address: Millipore Biopharmaceutical Division, Bioprocessing Ltd, Medomsley Road, Consett DH8 6SZ, United Kingdom.

*Author for Correspondence.
Department of Process and Food Engineering
Faculty of Engineering,
Universiti Putra, Malaysia, 43400 UPM
Serdang, Selangor,Malaysia
Tel: 603 – 89466366; Fax: 603 – 86567123
Email: This email address is being protected from spambots. You need JavaScript enabled to view it.

Key words: anion exchange, dye-ligand, Cibacron Blue 3GA, fluidised bed adsorption, G3PDH

Abstract.
The comparative recovery performance of anion exchange and dye ligand fluidised bed adsorption of intracellular enzyme, glyceraldehydes 3-phosphate dehydrogenase (G3PDH) from unclarified disrupted yeast has been undertaken. The commercially available anion exchanger, Streamline QXL and the kiesleguhr-agarose composite adsorbent, Microsorb K6AX derived with dye-ligand (Cibaron Blue 3GA) were employed in fluidized bed experiments. The adsorbents were evaluated in respect of recovery performance in terms of yield, purity and enzyme specific activity.

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