Abstract Prevalence and viability assessment of endophytic fungi in Iranian tall fescue (Festuca arundinacea Schreb.)

As. Pac. J. Mol. Biol. & Biotech., Dec 2001 Vol. 9(1) : 60-66

Prevalence and viability assessment of endophytic fungi in Iranian tall fescue (Festuca arundinacea Schreb.)

M. Khayyam Nekouei1, A.F. Mirlohi2, M. Naderi Shahab3,Sariah Meon4, A. Manaf Ali1,
and Suhalmi Napis1*

1Department of Biotechnology, Faculty of Food Science and Biotechnology, Universiti Putra Malaysia; 2Department of Agronomy and Plant Breeding, College of Agriculture, Isfahan University of Technology, Iran; 3Department of Genetic and Plant Physiology, Research Institute of Forests and Rangelands Tehran, Iran; 4Department of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, Malaysia

(Received 31 October 2000 / Accepted 20 February 2001)

Abstract.
An assessment on the infection status and viability of endophytic fungi in Iranian tall fescue would aid in identifying potentially desirable endophyte strains for use in genetic improvement of pasture and turf species. Nineteen tall fescue accessions collected from various regions were screened for Neotyphodium infection. Fifty seeds per accession were evaluated by microscopic staining methods to detect the presence of endophyte(s), and also to determine the infection rate in the collected tall fescue accessions. Out of the 19 accessions evaluated, 16 (84.2%) were found to be infected with endophyte(s) at infection rates of between 20 to 95%. Out of those infected, five accessions recorded infection rates of more than 90% while 3 accessions were free of endophytes. The occurrence of endophytic fungi were also determined in seedlings as an indication of fungal viability. Fifty tillers per accession were microscopically examined; and out of the 16 infected seed accessions analysed, 14 had viable endophytes in the seedlings. The incidence of endophytic fungi infection, based on the percentages of infection in seedlings, varied from 15% to 100%. The average rate of infection marginally decreased from seeds to seedlings suggesting the reduction in fungal viability upon seed storage. To our knowledge, this is the first report on the presence of endophytic fungi in Iranian tall fescue germplasm c61lection and consequently the germplasm collection can provide a greater diversity of plant and fungus genotypes for introduction into future plant breeding programs.

Keywords: Endophytic fungi, Neotyphodium sp., Acremonium sp., tall fescue, Festuca arundinacea, symbiosis

Abstract Comparative study of four different techniques for epidemiological typing of Salmonella enteritidis

As. Pac. J. Mol. Biol. & Biotech., Dec 2001 Vol.9(1) : 25-30

Comparative study of four different techniques for epidemiological typing of Salmonella enteritidis

S. Radu1, K. N. Ang1, G. Rusul2*, L.Samuel1 and W. L. 0oi 1

1Department of Biotechnology, 2Department of Food Science, Faculty of Food Science and Biotechnol
ogy, University Putra Malaysia, 43400 Serdang, Selangor Malaysia.

(Received 24 March 2001 / Accepted 5 July 2001)

Abstract.
A total of 27 isolates of S. enteritidis from poultry and one isolate from human source were investigated by RAPD PCR, BOX PCR, plasmid profile and antibiotic resistance patterns. All isolates were (100%) resistant to penicillin, bacitracin, clindamycin and carbenicillin; and all isolates can be separated into five antibiotic resistant patterns. All the isolates showed high multiple antibiotic resistance index, indicating that all strains tested were originated from high risk sources. All the isolates carry at least one plasmid ranging from 1.9 to 37 MDa and enabled the S. enteritidis to be grouped into eight plasmid profiles. RAPD PCR with primers Genl 50 03 and Gen 1 50 09 and BOX PCR with primer BOXA21R differentiated the isolates into 22, 16 and 14 distinct DNA patterns respectively. RAPD results showed that isolates were genetically very heterogeneous, while BOX PCR results reflect the distribution of the BOX element in the genome among the isolates. RAPD PCR showed the highest discriminating power among all the techniques, while BOX PCR indicated a good potential for use in epidemiological investigations. Although antibiotic resistance and plasmid profiles were found to be less sensitive than the PCR based techniques tested, nevertheless, the PCR based techniques provided additional evidence for determination of the relatedness of the isolates of S. enteritidis.

Keywords: Salmonella enteritidis, antibiotic resistance, plasmid, BOX PCR, RAPD

Abstract Comparative analysis of regenerants between single and naked meristem (scalps) of Musa acuminata var. Berangan

As. Pac. J. Mol. Biol. & Biotech., Dec 2002 Vol. 10 (2) : 127-131

RESEARCH NOTE
Comparative analysis of regenerants between single and naked meristem (scalps) of Musa acuminata var. Berangan


Nor Aziah Juli and Norzulaani Khalid*

Institute of Biological Sciences, Faculty of Science, University of Malaya, 50603 Kuala Lumpur.

Abstract.
The regeneration capacity of banana meristem in vitro was compared between single meristem and scalp methods. Scalps were induced on p4 media containing MS (Murashige and Skoog, 1962) components supplemented with coconut water and high concentration of benzyl amino purine (BAP) (75µM). The number of regenerated shoots produced from scalps was six-fold higher than that generated from single meristems. A comparison of the growth response upon gibberelic acid (GA3) treatment was made between plantlets derived from both methods to detect dwarf off-types. The difference in height and the number of leaves between plantlets from both sources was statistically insignificant. On the other hand, RAPD analysis using 40 random primers displayed approximately 26% variation in single meristem while naked meristem exhibited 74% variation.

Keywords: Micropropagation, somaclonal variation, RAPD analysis, banana, tissue culture

*Author for Correspondence.
E-mail: This email address is being protected from spambots. You need JavaScript enabled to view it.

Abstract The versatility of comparative genomics in the post genomic era

As. Pac. J. Mol. Biol. & Biotech., Dec 2001 Vol. 9(1) : 1-6

The versatility of comparative genomics in the post genomic era

Philippa Melamed and Boon Chuan Low*

Department of Biological Sciences, National University of Singapore, Blk S2, 14 Science Drive 4, Singapore 117543

(Received 22 January 2001 / Accepted 30 March 2001)

Abstract.
The biggest challenge scientists are facing in this post genomic era is to define the hidden messages in the strings of genetic codes. The best and easiest route to achieve this is to compare the genomic contents of various species and methodically sieve through the information to correlate what is "common" and what is "unique". The tool of comparative genomics has allowed us to explore various disciplines in life sciences, ranging from the basic understanding of evolution and systematics, developmental and cell biology, protein function, to the applications of development in drug discovery and pharmacogenomics as well as environmental protection. This review will highlight a few key areas where such applications are now being pursued with good promises and reinforces the need to develop comparative genomics as a multi disciplinary tool.

Keywords: biotechnology, comparative genomics, evolution, pharmacogenomics, proteins

Abstract Molecular biology and immunology of equine herpesvirus type 1 (equine abortion virus)

As. Pac. J. Mol. Biol. & Biotech., Dec 2001 Vol. 9(1) : 6-20

Molecular biology and immunology of equine herpesvirus type 1 (equine abortion virus)

M.L. Mohd Azmi* and M.I. Kamarudin

(Received I February 200I / Accepted 30 April 2001)

Abstract.
Considerable advances have been made in understanding the components of the virion particles of equine herpesvirus type I (EHV 1). Many functions of related glycoproteins in virus pathogenicity and their molecular interactions with the immune system have been revealed. There is a great challenge of understanding their roles and the complexities underlying protective immune mechanism, but the increasingly widespread application of molecular biological approaches is leading to rapid advances of this area.

Keywords: Equine herpesvirus type 1, molecular biology, immunology

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