Abstract Survival of bifidobacteria in simulated gastric pH and growth in the presence of bile

As. Pac. J. Mol. Biol. & Biotech., Dec 1999 Vol. 7(2) : 185

Survival of bifidobacteria in simulated gastric pH and growth in the presence of bile

A.M. Yazid1*, M. Shuhaimi1, A.M. Ali2, M.H. Ghazali2, J. Normah1, A.B. Fatimah3,
N.A. Nur Atiqah4 and A. Reezal3

1Department of Food Technology, 2Department of Biotechnology, 3Department of food Science, Faculty of Food Science and
Biotechnology, Universiti Putra Malaysia, 43400 Serdang, Selangor,
4Department of Paediatrics, Kuala Lumpur Hospital, Jalan Pahang, 50586 Kuala Lumpur, Malaysia

(Received 10 April 1999 / Accepted 29 July 1999)

Abstract.
The ability of eighteen strains of genus Bifidobacterium spp. to survive in a simulated gastric pH and tolerance to bile acids exposure was investigated. Four strains namely, B. bifidum (ATCC 35914), B. adolescentis (ATCC 11146), B. breve (ATCC 15698) and B. infantis (ATCC 27920) showed excellent growth following 90 min exposure to extreme acidic condition (pH 2.5). Strains B. breve (ATCC 15701) and B. adolescentis (ATCC 15706) showed good acid tolerance and another 2 strains (B. adolescentis ATCC 15705 and B. longum ATCC 15707) possessed moderate ability to tolerate exposure to low pH. The remaining 10 strains did not survive the extreme acid condition. The ability to grow in the presence of bile acids was variable among strains. Four strains (B. longum ATCC 15707 and ATCC 15708, B. adolescentis ATCC 11146 and B. asteroides ATCC 25910) showed good tolerance and another 5 strains (B. breve ATCC 15700 and 15701, B. asteroides ATCC 25909, B. bifidum ATCC 35914 and B. infantis ATCC 27920) showed moderate tolerance and the rest were sensitive to bile acids. No correlation was observed between the ability to survive extreme acidic condition and the ability to grow in the presence of bile. The strains that possess excellent acid tolerance were not necessarily tolerant to bile, and vice versa.

Keywords: Bifidobacteria, tolerance, pH, bile acids

Abstract Recent advances in molecular biology and immunology of marek's disease

As. Pac. J. Mol. Biol. & Biotech., Dec 1998 Vol. 6(1) : 1-12

Recent advances in molecular biology and immunology of marek's disease

A. R. Omar1* and K. A. Schat

*1Department of Veterinary Pathology and Microbiology, Faculty of Veterinary Medicine and Animal Science, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia, Department of Microbiology and Immunology,
College of Veterinary Medicine, Cornell University, Ithaca, NY 14850, USA.

(Received 8 December 1997 / Accepted 10 January 1998)

Abstract.
Marek's disease virus (MDV) genes with homology to herpes simplex virus genes encoding for immediate early, early and late proteins and genes unique to MDV have been cloned and sequenced. Similarly, MDV genes that have significant homology to known oncogenes have also been characterized. Chickens vaccinated against this disease induce neutralizing antibody response and probably cytotoxic T lymphocyte activity that confer protection against subsequent challenge.

Keywords: Molecular Biology, Immunology, Marek's Disease Virus

Abstract Screening of acid aluminium tolerant Bradyrhizobium japonicum strains: analysis of marker genes and competition in planta

As. Pac. J. Mol. Biol. & Biotech., Dec 1998 Vol. 6(1) : 13-20

Screening of acid aluminium tolerant Bradyrhizobium japonicum strains: analysis of marker genes and competition in planta

Aris Tri Wahyudi, Antonius Suwanto*, Tedja Imas and Aris Tjahjoleksono

Department of Biology, Faculty of Mathematics and Sciences, Bogor Agricultural University, Jl. Raya Pajajaran, Bogor 16144, Indonesia.

(Received 9 August 1997 / Accepted 18 November 1997)

Abstract.
The genes, inaZ from Pseudomonas syringae, xylE from P. putida and the kanamycin resistance gene (KmR) of mini-Tn5Km1, were studied for their capabilities and reliabilities as molecular markers in three acid tolerant Bradyrliizobium japonicum strains. Conjugation was used to transfer each of these genes to B. japonicum strains. Mating was conducted on membrane filter (0.45 gm, Millipore) using modified Luria Agar. The results showed that all of the genes were able to be transferred to acid tolerant B. japonicum strains by conjugation. All of these bacteria were able to express the inaZ and KmR genes. However, none of the exconjugants was able to express the xylE gene. Acid tolerant B. japonicum strains that carried each of these genes were able to form root nodules in either siratro or soybean plant. The KmR gene had high stability as tested after nodulation. experiments. This gene was subsequently used as a genetic marker in a competition study of acid tolerant B. japonicum strains for nodule occupancy in soybean plant. This study was conducted using acid tolerant soybean cultivar (B 09) grown in Leonard jars using nitrogen free nutrient solution (pH 4.5 + Al 50 µM). Mixtures of acid tolerant B. japonicum strains and USDA 110 were inoculated in 1:1 ratio and nodules were harvested 30 days after planting. The results indicated that one exconjugant strain (11.71Km) dominated root nodules. Thus this strain has the potential to be developed as soybean inoculant in acid soils.

Keywords: Acid Aluminium Tolerance, Bradyrhizobium japonicum Marker Genes, Competition

Abstract Influence of the mRNA secondary structures on the expression of a giant catfish Pangasianodon gigas growth hormone gene in E. coli

As. Pac. J. Mol. Biol. & Biotech., Dec 1998 Vol. 6(1) : 21-28

Influence of the mRNA secondary structures on the expression of a giant catfish Pangasianodon gigas growth hormone gene in E. coli

Saovaros Svasti1, Wipa Chungjatupornchaj2 and Sakol Panyim I,2,*

1Department of Biochemistry, Faculty of Science, Mahidol University, Bangkok, Thailand
2Institute of Science and Technology for Research and Development, Mahidol University, Salaya Campus,
Nakornpathom, 73170, Thailand.

(Received 22 September 1997 / Accepted 9 February 1998)

Abstract.
Expression of giant catfish growth hormone (gcGH) gene under the control of the lambda Pr promoter was comparatively low in Escherichia coli. mRNA secondary structure analysis predicted that there are new two hairpin loops: one at the Shine Dalgarno (SD) sequence region with ?G = 7.9 kcal/mol, the other at the initiation codon region with ?G = 4.2 kcal/mol. The effect of the mRNA secondary structures on the expression level of gcGH gene in E. coli was investigated. Several site specific mutations were introduced into stem loops at the Shine Dalgarno (SD) sequence region and the initiation codon region to disrupt the secondary structures. Completely destabilizing the stem loop at the SD sequence region while maintaining that at the initiation codon region, or vice versa, increased gcGH gene expression level fifty five and fifty folds, respectively. Complete destabilization of the two stem loops hence creating a new stem loop increased the gcGH expression one hundred and five fold.

Keywords: Growth Hormone, Giant Catfish, mRNA

Abstract Hyper thermophilic fermentative bacteria in Malaysian petroleum reservoirs

As. Pac. J. Mol. Biol. & Biotech., Dec 1998 Vol. 6(1) : 29-38

Hyper thermophilic fermentative bacteria in Malaysian petroleum reservoirs

M.S. Madihah, A.B. Ariff*, F.H. Akmam1, A.G. Baharuddin1 and MIA Karim

Department of Biotechnology, Universiti Putra Malaysia, 43400 Serdang, Selangor, Malaysia; 1Land & General Berhad, No 7, Persiaran Dagang, Bandar Sri Damansara, 52200 Kuala Lumpur, Malaysia.

(Received 9 September 1997 / Accepted 18 November 1997)

Abstract.
Production waters, collected from 9 petroleum reservoirs in Malaysia, were examined chemically and microbiologically to investigate the potential for microbiological enhanced oil recovery. For all petroleum reservoirs investigated, surface water is injected into the reservoirs as part of the secondary oil recovery processes. The depth, temperature, salinity and pH of the reservoirs ranged from 697 to 2,412 metres, 35oC to 94.5oC, 29,250 mg/I to 126,500 mg/I and 6.36 to 8.41, respectively. Chemical analysis indicated a lack of soluble nitrogen and phosphorus in all production waters. However, the waters from all reservoirs are rich with metal ions. The partially characterized strains isolated from the reservoirs were assigned to three morphologically distinctive groups (i) pleomorphic rodshaped which appeared singly or in pairs, (ii) sheathed rod shaped bacteria with single terminal spheroids, and (iii) non sheathed rod shaped with terminal sporulation. These bacteria grew well around neutral pH and temperatures ranging from 60oC to 90oC. Growth of all bacteria was supported individually by yeast extract. The bacteria also grew well in fermentable carbon sources such as glucose, mannose and lactate with significant production of ethanol, acetone, organic acids (oxalic, tartaric, malic, acetic and succinic), C02 and H2' suggesting that the bacteria were fermentative.

Keywords: Extreme Thermophile, Anaerobic Bacteria, Fermentative Bacteria, Petroleum Reservoirs.

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