Abstract Application of randomly amplified polymorphic DNA markers (RAPD) to distinguish isolates of V.cholera and V.alginolyticus

As. Pac. J. Mol. Biol. & Biotech., Dec 2000 Vol. 8(2) : 131-136

Application of randomly amplified polymorphic DNA markers (RAPD) to distinguish isolates of V.cholera and V.alginolyticus

V. Neela1, M.N. Shamsudin1*, W. Somarny1, R. Rozita2, A.R. Raha3 and S. Radu3

1Department of Clinical Laboratory Sciences and 2Department of Human Growth and Development, Faculty of
Medicine and Health Sciences; 3Department of Biotechnology, Faculty of Food Science and Biotechnology, University
Putra Malaysia, 43400 UPM Serdang, Selangor, Malaysia

Received 10 August 2000 / Accepted 15 October 2000

Abstract.
A total of I I clinical isolates of V.cholera (9 Ogawa isolates, I Inaba isolate and I Bengal isolate) and 4 isolates of V.alginolyticus were studied by randomly amplified polymorphic DNA fingerprinting (RAPD) with twenty different 10 meroligonucleotide primers. Thirteen primers generated revealing a total of 185 DNA markers with sizes ranging from 100 10,000 bp which showed polymorphisms in all 15 isolates of V. cholera and V. alginolyticus. The overall percentages of the similarity ranged from 41 to 89% among V. cholera isolates and 21 to 43% for V. alginolyticus isolates. In addition, the genetic distance ranged from 0.320513 to 0.710843 for V.cholera and 0.275229 to 0.846774 for V. alginolyticus. The dendrogram showed that the V. alginolyticus isolates were grouped into one cluster and 2 single isolates, whereas V.cholera isolates were grouped into 2 clusters and 2 single isolates at a distance level of 70%. The three primers that produced distinct banding patterns for isolates of different Vibrio species were identified as being suitable primers to produce genetic markers, which have the potential to be used as species specific diagnostic probes. Our study therefore demonstrated that when suitable primers are identified and applied, RAPD analysis is simple and rapid method for clearly distinguishing between Vibrio spp.

Keywords: Vibrio cholera, vibrio alginolyticus, RAPD, dendrogram

Abstract Production of high frequency multiple shoots and plantlets in six Indian cultivars of cotton (Gossypium hirsutum L.)

As. Pac. J. Mol. Biol. & Biotech., Dec 1999 Vol. 7(1) : 73-78

Production of high frequency multiple shoots and plantlets in six Indian cultivars of cotton (Gossypium hirsutum L.)

A Mhatre, P. Suprasanna, R. Jaiswal, V. V. Kumar and P. S. Rao*

Nuclear Agriculture & Biotechnology Division, Bhabha Atomic Research Centre, Trombay, Mumbai 400 085, India.
Email. This email address is being protected from spambots. You need JavaScript enabled to view it.

(Received 10 December 1998 / Accepted 4 March 1999)

Abstract.
A protocol for the production of high frequency multiple shoots using seedling apices with cotyledonary node of six Indian cultivars of cotton (Gossypium hirsutum L.) has been developed. An average of 7 10 shoots per explant were produced directly from the shoot apices excised from 10 day old seedlings on MS medium containing BAP (8.87?M) along with adenine sulphate (81.43 ?M) or kinetin (4.67 ?M). Rooting of isolated shoots was achieved on MS medium containing NAA (0.054?M). Rooted plantlets exhibited 95% survival during hardening in the greenhouse and regenerated plants grew to maturity with normal flowering and boll set.

Keywords: Cotton, Gossypium hirsutum, plant regeneration, in vitro culture

Abstract Screening for undetected ß globin gene mutations using chemical cleavage of mismatch method in patients registered with the Thalassaemia Registry, University Hospital Kuala Lumpur

As. Pac. J. Mol. Biol. & Biotech., Dec 1999 Vol. 7(1) : 29-38

Screening for undetected ß globin gene mutations using chemical cleavage of mismatch method in patients registered with the Thalassaemia Registry, University Hospital Kuala Lumpur

M.K. Thong1*, Z. Rudzki2 ,J. HaIl2, S. F. Yap3, KL. Tan3 and J.A.M.A. Tan3

1Department of Paediatrics and 2Department of Allied Health Sciences, Faculty of Medicine,
University of Malaya, 50603 Kuala Lumpur, Malaysia . 3The Molecular Pathology Unit,
Institute of Medical and Veterinary Science, Frome Road, SA 5000, Australia.

(Received 7 December 1998 / Accepted 12 February 1999)

Abstract.
Advances in molecular diagnostic techniques have resulted in the characterisation of over 200 mutations causing ß thalassaemia. In addition, each population appears to have its own unique set and frequency of ß globin gene mutations. The strategy for prenatal diagnosis therefore involves screening at risk couples for the most common mutations known to be present in the ethnic group or population. As a result of this selective approach, uncommon or novel mutations are not detected. We undertook to characterise B globin gene mutations which remain undetected following polymerase chain reaction (PCR) and amplification refractory mutation system (ARMS) analyses. In this study, we successfully identified 13 of the 16 'unknown' alleles using chemical cleavage of mismatch (CCM) method and direct sequencing. As a result of this coupled strategy (ARMS and CCM), 98.5% of the ß globin gene mutations in the Thalassaemia Registry, University Hospital Kuala Lumpur were characterised.

Keywords: ß thalassaemia, chemical cleavage of mismatch, uncommon mutations, mutation detection

Abstract Use of polymerase chain reaction for improved diagnosis of tuberculosis in children

As. Pac. J. Mol. Biol. & Biotech., Dec 1999 Vol. 7(1) : 29-38

Use of polymerase chain reaction for improved diagnosis of tuberculosis in children

T.H. Tang1, M. Musa1, Z.F. Zainuddin1, K.E. Choo2,L. Mohd Noh1, K A. Myat1,
1. Yaacob1, H. Ismail2, M. Mustaffa3 and Maheran Musa2

1School of Medical Sciences, Universiti Sains Malaysia Cawangan Kelantan, Kota Bharu, Kelantan, Malaysia;
2Paediatric Unit, Kota Bharu Hospital, Kota Bharu, Kelantan, Malaysia; 3Chest Clinic,
Kota Bharu Hospital, Kota Bharu, Kelantan, Malaysia

(Received 8 December 1998 / Accepted 26 February 1999)

Abstract.
Tuberculosis (TB) in children is severe especially for those under 5 years old, with a tendency to extrapulmonary spread to other organs with high morbidity and mortality. Thus, in contrast to most adult cases, TB in children often requires urgent treatment but diagnosis is often difficult to establish by clinical and conventional laboratory methods. Rapid tests based on molecular techniques for diagnosis of TB have been widely reported but relatively few involve paediatric cases. In this study, a polymerase chain reaction (PCR) based test using primers derived from the insertion sequence IS 6110 and a new Mycobacterium tuberculosis complex specific target designated as B9 was developed and used for detecting the organism in specimens taken from four paediatric patients. This method was found to be a useful addition to the current battery of tests available to the paediatrician particularly in cases where diagnoses are difficult to establish.

Keywords: B9, IS6110, Mycobacterium tuberculosis, paediatric, PCR

Abstract Isolation and characterisation of a cDNA encoding I aminocyclopropane l carboxylate oxidase from mango (Mangifera indica L.)

As. Pac. J. Mol. Biol. & Biotech., Dec 1999 Vol. 7(1) : 53-60

Isolation and characterisation of a cDNA encoding I aminocyclopropane l carboxylate oxidase from mango (Mangifera indica L.)

Z. Zainal*, G. A. Tucker and G. W. Lycett

Department ofPhysiology and Environmental Science, Faculty of Agricultural and Food Sciences, University of Nottingham, Sutton Bonington Campus, Loughborough, Leicestershire. LE12 5RD, UK

(Received 15 February 1999 / Accepted 28 May 1999)

Abstract.
A full length cDNA clone designated as pNY601 encoding I aminocyclopropane I carboxylate (ACC) oxidase was isolated from a ripening mango (Mangifera indica L.) cDNA library using pTOM13 as a probe. Plasmid pNY601 is 1213 bp and contains a single open reading frame encoding a 324 amino acid polypeptide with a calculated molecular weight of 36.7 kDa and pI of 5.4. The deduced amino acid sequence shows considerable sequence (80-90%) similarity to other ACC oxidases; from various plant species. Northern blot analysis of RNA isolated from different stages of ripening shows that expression began while the fruits were still at the mature green stage. The appearance of these transcripts before ripening process take place may be due to chilling injury.

Keywords: Gene expression, Mangifiera indica, ACC oxidase, cDNA, fruit ripening

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